From 70807f9c3d2932cdcd73b2025fdcf25a32dae76e Mon Sep 17 00:00:00 2001 From: Guilhem Moulin Date: Wed, 27 Sep 2023 14:56:36 +0200 Subject: Get taxon redlist categories. --- gis-observation-map | 37 ++++++++++++++++++++++++++++++++++--- 1 file changed, 34 insertions(+), 3 deletions(-) diff --git a/gis-observation-map b/gis-observation-map index 9c478c7..4fe06cf 100755 --- a/gis-observation-map +++ b/gis-observation-map @@ -21,6 +21,7 @@ import argparse import sys import json +import re import requests import configparser from requests.exceptions import HTTPError @@ -380,7 +381,10 @@ def getTaxonLists(): if not i in taxonLists2[d0]: raise Exception(f'missing taxon #{i} (in {d}) from {d0}') - return taxonLists2 + i = getTaxonList(taxonLists, taxonLists2, 'TaxonIsRedlisted', 'Redlisted species') + taxonRedlistCategories = getTaxonRedlistCategories(taxonLists, i) + + return taxonLists2, taxonRedlistCategories def getTaxonList(taxonLists, taxonLists2, key, name): i = None @@ -402,7 +406,34 @@ def getTaxonList(taxonLists, taxonLists2, key, name): raise Exception(f'expected list, got {type(resp)}') taxonLists2[key] = {r['id'] for r in resp} -taxonLists = getTaxonLists() + return i + +def getTaxonRedlistCategories(taxonLists, i): + taxonRedlistCategories = {} + r = re.compile(r'\(([A-Z][A-Z])\)\Z') + for t in taxonLists: + if 'parentId' not in t.keys() or t['parentId'] != i: + continue + name = t['name'] + c = r.search(name) + if not c: + raise Exception(f'invalid redlist name "{name}"') + c = c.group(1) + + resp = requests.get( + artDataBankenURL + f'/species-observation-system/v1/TaxonLists/{t["id"]}/Taxa', + headers=artDataBankenHeaders + ) + resp.raise_for_status() + resp = resp.json() + if type(resp) != list: + raise Exception(f'expected list, got {type(resp)}') + for t in resp: + j = t['id'] + if j in taxonRedlistCategories.keys(): + raise Exception(f'duplicate redlist classification for taxon #{j}') + taxonRedlistCategories[j] = c + return taxonRedlistCategories geograficsFilter = { 'geometries': geometricFilter(geometries), @@ -410,7 +441,7 @@ geograficsFilter = { 'considerObservationAccuracy': True, 'considerDisturbanceRadius': True } -print(json.dumps(geograficsFilter, indent=4)) +taxonLists, taxonRedlistCategories = getTaxonLists() exit() topo_maps = ['Topografi 10', 'Topografi 50', 'Topografi 100'] -- cgit v1.2.3