From 9312e1b3513100c229fc67308bddf9132b284c9e Mon Sep 17 00:00:00 2001
From: Guilhem Moulin <guilhem@fripost.org>
Date: Wed, 27 Sep 2023 19:18:19 +0200
Subject: Search filter: search only for mushrooms and plants of interest
 naturewise.
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Hence remove invasive species and “other” categories from the style
file.
---
 gis-observation-map | 28 ++++++++++++++++++++++++++--
 1 file changed, 26 insertions(+), 2 deletions(-)

(limited to 'gis-observation-map')

diff --git a/gis-observation-map b/gis-observation-map
index 23ca88e..afc4071 100755
--- a/gis-observation-map
+++ b/gis-observation-map
@@ -391,12 +391,15 @@ def getObservations(taxonLists, taxonRedlistCategories, data):
                 properties[k] = v
 
     # TODO generate GPKG instead and reproject to EPSG:3006
-    path = projectHome.joinpath('fynd.geojson')
+    path = projectHome.joinpath('observations.geojson')
     with path.open(mode='w') as fp:
         json.dump(obs, fp, indent=2, ensure_ascii=False)
 
     if projectInstance is not None:
-        layer = QgsVectorLayer(path.as_posix() + '''|subset="Kingdom" IN ('Fungi', 'Plantae') AND "IsPositiveObservation" AND "IsNaturalOccurrence" AND NOT "IsNotRediscoveredObservation" AND "CoordinateUncertaintyInMeters" <= 250''', path.stem, 'ogr')
+        layer = QgsVectorLayer(
+            path.as_posix() + '''|subset="IsPositiveObservation" AND "IsNaturalOccurrence" AND "CoordinateUncertaintyInMeters" <= 250''',
+            'Fynd', 'ogr'
+        )
         if not layer.isValid():
             raise Exception(f'ERROR: {path}: failed to load in QGIS')
         if 'QGIS' in config.keys() and 'style' in config['QGIS']:
@@ -621,6 +624,27 @@ searchFilter = {
     }
 }
 
+# https://artfakta.se/artinformation/taxa/biota-0/detaljer
+kingdomIds = {
+    'Animalia': 5000001,
+    'Archaea': 5000082,
+    'Bacteria': 5000052,
+    'Chromista': 5000055,
+    'Fungi': 5000039,
+    'Plantae': 5000045,
+    'Protozoa': 5000060,
+    'Viruses': 5000083,
+    'Algae': 6001047,
+}
+
+searchFilter['taxon'] = {
+    'ids': list(map(lambda k: kingdomIds[k], ['Fungi', 'Plantae'])),
+    'includeUnderlyingTaxa': True,
+    # https://github.com/biodiversitydata-se/SOS/blob/master/Docs/SearchFilter.md#taxon-lists
+    'taxonListIds': [1, 2, 7, 8, 13, 18],
+    'taxonListOperator': 'Filter'
+}
+
 getObservations(taxonLists, taxonRedlistCategories, searchFilter)
 
 topo_maps = ['Topografi 10', 'Topografi 50', 'Topografi 100']
-- 
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