1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
1001
1002
1003
1004
1005
1006
1007
1008
1009
1010
1011
1012
1013
1014
1015
1016
1017
1018
1019
1020
1021
1022
1023
1024
1025
1026
1027
1028
1029
1030
1031
1032
1033
1034
1035
1036
1037
1038
1039
1040
1041
1042
1043
1044
1045
|
#!/usr/bin/python3
#----------------------------------------------------------------------
# Backend utilities for the Klimatanalys Norr project (import source layers)
# Copyright © 2024-2025 Guilhem Moulin <info@guilhem.se>
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <https://www.gnu.org/licenses/>.
#----------------------------------------------------------------------
# pylint: disable=invalid-name, missing-module-docstring, fixme
import logging
import tempfile
import re
from fnmatch import fnmatchcase
from pathlib import Path
from datetime import datetime, timedelta, UTC
from typing import Any, Final, Iterator, Optional
import traceback
from enum import Enum, unique as enum_unique
from hashlib import sha256
import struct
from osgeo import gdal, ogr, osr
from osgeo.gdalconst import (
OF_ALL as GDAL_OF_ALL,
OF_READONLY as GDAL_OF_READONLY,
OF_UPDATE as GDAL_OF_UPDATE,
OF_VERBOSE_ERROR as GDAL_OF_VERBOSE_ERROR,
DCAP_CREATE as GDAL_DCAP_CREATE,
)
from osgeo import gdalconst
from common import BadConfiguration, escape_identifier, escape_literal_str
from common_gdal import (
gdalSetOpenExArgs,
gdalGetMetadataItem,
gdalVersionMin,
formatTZFlag,
getSpatialFilterFromGeometry,
)
def openOutputDS(def_dict : dict[str, Any]) -> gdal.Dataset:
"""Open and return the output DS. It is created if create=False or
create-options is a non-empty dictionary."""
path = def_dict['path']
kwargs, drv = gdalSetOpenExArgs(def_dict, flags=GDAL_OF_UPDATE|GDAL_OF_VERBOSE_ERROR)
try:
logging.debug('OpenEx(%s, %s)', path, str(kwargs))
return gdal.OpenEx(path, **kwargs)
except RuntimeError as e:
if not (gdal.GetLastErrorType() >= gdalconst.CE_Failure and
gdal.GetLastErrorNo() == gdalconst.CPLE_OpenFailed):
# not an open error
raise e
dso2 = None
try:
dso2 = gdal.OpenEx(path, nOpenFlags=GDAL_OF_ALL | GDAL_OF_UPDATE)
except RuntimeError:
pass
if dso2 is not None:
# path exists but can't be open with OpenEx(path, **kwargs)
raise e
try:
dso2 = gdal.OpenEx(path, nOpenFlags=GDAL_OF_ALL)
except RuntimeError:
pass
if dso2 is not None:
# path exists but can't be open with OpenEx(path, **kwargs)
raise e
dsco = def_dict.get('create-options', None)
if not def_dict.get('create', False) and dsco is None:
# not configured for creation
raise e
if drv is None or not gdalGetMetadataItem(drv, GDAL_DCAP_CREATE):
# not capable of creation
raise e
if 'open_options' in kwargs:
# like ogr2ogr(1)
logging.warning('Destination\'s open options ignored '
'when creating the output datasource')
kwargs2 = { 'eType': gdalconst.GDT_Unknown }
if dsco is not None:
kwargs2['options'] = [ k + '=' + str(v) for k, v in dsco.items() ]
logging.debug('Create(%s, %s, eType=%s%s)', drv.ShortName, path, kwargs2['eType'],
', options=' + str(kwargs2['options']) if 'options' in kwargs2 else '')
# XXX racy, a GDAL equivalent of O_EXCL would be nice
return drv.Create(path, 0, 0, 0, **kwargs2)
def createOutputLayer(ds : gdal.Dataset,
layername : str,
srs : Optional[osr.SpatialReference] = None,
options : dict[str, Any]|None = None) -> ogr.Layer:
"""Create output layer."""
if options is None or len(options) < 1:
raise BadConfiguration(f'Missing schema for new output layer "{layername}"')
logging.info('Creating new destination layer "%s"', layername)
geom_type = options['geometry-type']
lco = options.get('options', None)
drv = ds.GetDriver()
if geom_type != ogr.wkbNone and drv.ShortName == 'PostgreSQL':
# “Important to set to 2 for 2D layers as it has constraints on the geometry
# dimension during loading.”
# — https://gdal.org/drivers/vector/pg.html#layer-creation-options
if ogr.GT_HasM(geom_type):
if ogr.GT_HasZ(geom_type):
dim = 'XYZM'
else:
dim = 'XYM'
elif ogr.GT_HasZ(geom_type):
dim = '3'
else:
dim = '2'
if lco is None:
lco = []
lco = ['dim=' + dim] + lco # prepend dim=
kwargs = { 'geom_type': geom_type }
if srs is not None:
kwargs['srs'] = srs
if lco is not None:
kwargs['options'] = lco
logging.debug('CreateLayer(%s, geom_type="%s"%s%s)', layername,
ogr.GeometryTypeToName(geom_type),
', srs="' + kwargs['srs'].GetName() + '"' if 'srs' in kwargs else '',
', options=' + str(kwargs['options']) if 'options' in kwargs else '')
lyr = ds.CreateLayer(layername, **kwargs)
if lyr is None:
raise RuntimeError(f'Could not create destination layer "{layername}"')
# TODO use CreateLayerFromGeomFieldDefn() from ≥v3.9 as it's not
# possible to toggle the geomfield's nullable property after fact
# otherwise
fields = options['fields']
if len(fields) > 0 and not lyr.TestCapability(ogr.OLCCreateField):
raise RuntimeError(f'Destination layer "{layername}" lacks field creation capability')
# set up output schema
for fld in fields:
fldName = fld['Name']
defn = ogr.FieldDefn()
defn.SetName(fldName)
if 'AlternativeName' in fld:
v = fld['AlternativeName']
logging.debug('Set AlternativeName="%s" on output field "%s"', str(v), fldName)
defn.SetAlternativeName(v)
if 'Comment' in fld:
v = fld['Comment']
logging.debug('Set Comment="%s" on output field "%s"', str(v), fldName)
defn.SetComment(v)
if 'Type' in fld:
v = fld['Type']
logging.debug('Set Type=%d (%s) on output field "%s"',
v, ogr.GetFieldTypeName(v), fldName)
defn.SetType(v)
if 'SubType' in fld:
v = fld['SubType']
logging.debug('Set SubType=%d (%s) on output field "%s"',
v, ogr.GetFieldSubTypeName(v), fldName)
defn.SetSubType(v)
if 'TZFlag' in fld:
v = fld['TZFlag']
logging.debug('Set TZFlag=%d (%s) on output field "%s"',
v, formatTZFlag(v), fldName)
defn.SetTZFlag(v)
if 'Precision' in fld:
v = fld['Precision']
logging.debug('Set Precision=%d on output field "%s"', v, fldName)
defn.SetPrecision(v)
if 'Width' in fld:
v = fld['Width']
logging.debug('Set Width=%d on output field "%s"', v, fldName)
defn.SetWidth(v)
if 'Default' in fld:
v = fld['Default']
logging.debug('Set Default=%s on output field "%s"', v, fldName)
defn.SetDefault(v)
if 'Nullable' in fld:
v = fld['Nullable']
logging.debug('Set Nullable=%s on output field "%s"', v, fldName)
defn.SetNullable(v)
if 'Unique' in fld:
v = fld['Unique']
logging.debug('Set Unique=%s on output field "%s"', v, fldName)
defn.SetUnique(v)
if lyr.CreateField(defn, approx_ok=False) != gdalconst.CE_None:
raise RuntimeError('Could not create field "{fldName}"')
logging.debug('Added field "%s" to output layer "%s"', fldName, layername)
# sync before calling StartTransaction() so we're not trying to rollback changes
# on a non-existing table
lyr.SyncToDisk()
return lyr
# pylint: disable-next=too-many-branches
def validateOutputLayer(lyr : ogr.Layer,
srs : Optional[osr.SpatialReference] = None,
options : Optional[dict[str, Any]] = None) -> bool:
"""Validate the output layer against the provided SRS and creation options."""
ok = True
# ensure the output SRS is equivalent
if srs is not None:
srs2 = lyr.GetSpatialRef()
# cf. apps/ogr2ogr_lib.cpp
srs_options = [
'IGNORE_DATA_AXIS_TO_SRS_AXIS_MAPPING=YES',
'CRITERION=EQUIVALENT'
]
if not srs.IsSame(srs2, srs_options):
logging.warning('Output layer "%s" has SRS %s,\nexpected %s',
lyr.GetName(),
srs2.ExportToPrettyWkt(),
srs.ExportToPrettyWkt())
ok = False
if options is None:
return ok
layerDefn = lyr.GetLayerDefn()
n = layerDefn.GetGeomFieldCount()
if n != 1:
logging.warning('Output layer "%s" has %d != 1 geometry fields', lyr.GetName(), n)
geom_type1 = lyr.GetGeomType()
geom_type2 = options['geometry-type']
if geom_type1 != geom_type2:
logging.warning('Output layer "%s" has geometry type #%d (%s), expected #%d (%s)',
lyr.GetName(),
geom_type1, ogr.GeometryTypeToName(geom_type1),
geom_type2, ogr.GeometryTypeToName(geom_type2))
ok = False
fields = options.get('fields', None)
if fields is not None:
for fld in fields:
fldName = fld['Name']
idx = layerDefn.GetFieldIndex(fldName)
if idx < 0:
logging.warning('Output layer "%s" has no field named "%s"',
lyr.GetName(), fldName)
ok = False
continue
defn = layerDefn.GetFieldDefn(idx)
if 'AlternativeName' in fld:
v1 = defn.GetAlternativeName()
v2 = fld['AlternativeName']
if v1 != v2:
logging.warning('Field "%s" has AlternativeName="%s", expected "%s"',
fldName, v1, v2)
ok = False
if 'Comment' in fld:
v1 = defn.GetComment()
v2 = fld['Comment']
if v1 != v2:
logging.warning('Field "%s" has Comment="%s", expected "%s"',
fldName, v1, v2)
ok = False
if 'Type' in fld:
v1 = defn.GetType()
v2 = fld['Type']
if v1 != v2:
logging.warning('Field "%s" has Type=%d (%s), expected %d (%s)',
fldName,
v1, ogr.GetFieldTypeName(v1),
v2, ogr.GetFieldTypeName(v2))
ok = False
if 'SubType' in fld:
v1 = defn.GetSubType()
v2 = fld['SubType']
if v1 != v2:
logging.warning('Field "%s" has SubType=%d (%s), expected %d (%s)',
fldName,
v1, ogr.GetFieldSubTypeName(v1),
v2, ogr.GetFieldSubTypeName(v2))
ok = False
if 'TZFlag' in fld:
v1 = defn.GetTZFlag()
v2 = fld['TZFlag']
if v1 != v2:
logging.warning('Field "%s" has TZFlag=%d (%s), expected %d (%s)',
fldName, v1, formatTZFlag(v1), v2, formatTZFlag(v2))
ok = False
if 'Precision' in fld:
v1 = defn.GetPrecision()
v2 = fld['Precision']
if v1 != v2:
logging.warning('Field "%s" has Precision=%d, expected %d',
fldName, v1, v2)
ok = False
if 'Width' in fld:
v1 = defn.GetWidth()
v2 = fld['Width']
if v1 != v2:
logging.warning('Field "%s" has Width=%d, expected %d',
fldName, v1, v2)
ok = False
if 'Default' in fld:
v1 = defn.GetDefault()
v2 = fld['Default']
if v1 != v2:
logging.warning('Field "%s" has Default="%s", expected "%s"',
fldName, v1, v2)
ok = False
if 'Nullable' in fld:
v1 = bool(defn.IsNullable())
v2 = fld['Nullable']
if v1 != v2:
logging.warning('Field "%s" has Nullable=%s, expected %s',
fldName, v1, v2)
ok = False
if 'Unique' in fld:
v1 = bool(defn.IsUnique())
v2 = fld['Unique']
if v1 != v2:
logging.warning('Field "%s" has Unique=%s, expected %s',
fldName, v1, v2)
ok = False
return ok
def clearLayer(ds : gdal.Dataset, lyr : ogr.Layer) -> None:
"""Clear the given layer (wipe all its features)"""
n = -1
if lyr.TestCapability(ogr.OLCFastFeatureCount):
n = lyr.GetFeatureCount(force=0)
if n == 0:
# nothing to clear, we're good
return
layername_esc = escape_identifier(lyr.GetName())
# XXX GDAL <3.9 doesn't have lyr.GetDataset() so we pass the DS along with the layer
drv = ds.GetDriver()
if drv.ShortName == 'PostgreSQL':
# https://www.postgresql.org/docs/15/sql-truncate.html
query = 'TRUNCATE TABLE {table} CONTINUE IDENTITY RESTRICT'
op = 'Truncating'
else:
query = 'DELETE FROM {table}'
op = 'Clearing'
logging.info('%s table %s (former feature count: %s)', op,
layername_esc, str(n) if n >= 0 else 'unknown')
ds.ExecuteSQL(query.format(table=layername_esc))
def extractArchive(path : Path, destdir : str,
fmt : str|None = None,
patterns : list[str]|None = None,
exact_matches : list[str]|None = None) -> None:
"""Extract an archive file into the given destination directory."""
if fmt is None:
suffix = path.suffix
if suffix is None or suffix == '' or not suffix.startswith('.'):
raise RuntimeError(f'Could not infer archive format from "{path}"')
fmt = suffix.removeprefix('.')
fmt = fmt.lower()
logging.debug('Unpacking %s archive %s into %s', fmt, path, destdir)
if fmt == 'zip':
import zipfile # pylint: disable=import-outside-toplevel
logging.debug('Opening %s as ZipFile', path)
with zipfile.ZipFile(path, mode='r') as z:
namelist = listArchiveMembers(z.namelist(),
patterns=patterns,
exact_matches=exact_matches)
z.extractall(path=destdir, members=namelist)
else:
raise RuntimeError(f'Unknown archive format "{fmt}"')
def listArchiveMembers(namelist : list[str],
patterns : list[str]|None = None,
exact_matches : list[str]|None = None) -> list[str]:
"""List archive members matching the given parterns and/or exact matches."""
if patterns is None and exact_matches is None:
# if neither patterns nor exact_matches are given we'll extract the entire archive
return namelist
if patterns is None:
patterns = []
if exact_matches is None:
exact_matches = []
members = []
for name in namelist:
ok = False
if name in exact_matches:
# try exact matches first
logging.debug('Listed archive member %s (exact match)', name)
members.append(name)
ok = True
continue
# if there are no exact matches, try patterns one by one in the supplied order
for pat in patterns:
if fnmatchcase(name, pat):
logging.debug('Listed archive member %s (matching pattern "%s")', name, pat)
members.append(name)
ok = True
break
if not ok:
logging.debug('Ignoring archive member %s', name)
return members
@enum_unique
class ImportStatus(Enum):
"""Return value for importSources(): success, error, or no-change."""
IMPORT_SUCCESS = 0
IMPORT_ERROR = 1
IMPORT_NOCHANGE = 255
# pylint: disable-next=dangerous-default-value
def importSources(dso : gdal.Dataset, lyr : ogr.Layer,
sources : dict[str,Any] = {},
cachedir : Path|None = None,
extent : ogr.Geometry|None = None,
dsoTransaction : bool = False,
lyrcache : ogr.Layer|None = None,
force : bool = False) -> ImportStatus:
"""Clear lyr and import source layers to it."""
layername = lyr.GetName()
if dsoTransaction:
# declare a SAVEPOINT (nested transaction) within the DS-level transaction
lyrTransaction = 'SAVEPOINT ' + escape_identifier('savept_' + layername)
logging.debug('%s', lyrTransaction)
dso.ExecuteSQL(lyrTransaction)
elif lyr.TestCapability(ogr.OLCTransactions):
# try to start transaction on the layer
logging.debug('Starting transaction on output layer "%s"', layername)
lyrTransaction = lyr.StartTransaction() == ogr.OGRERR_NONE
if not lyrTransaction:
logging.warning('Couldn\'t start transaction on output layer "%s"', layername)
else:
logging.warning('Unsafe update, output layer "%s" doesn\'t support transactions',
layername)
lyrTransaction = False
rv = ImportStatus.IMPORT_NOCHANGE
now = datetime.now().astimezone()
try:
clearLayer(dso, lyr) # TODO conditional (only if not new)?
for source in sources:
_importSource(lyr, **source['source'],
args=source['import'],
cachedir=cachedir,
extent=extent)
# force the PG driver to call EndCopy() to detect errors and trigger a
# rollback if needed
dso.FlushCache()
if lyrcache is None:
rv = ImportStatus.IMPORT_SUCCESS
elif updateLayerCache(cache=lyrcache,
ds=dso, lyr=lyr,
force=force,
lyrTransaction=lyrTransaction,
last_updated=now):
rv = ImportStatus.IMPORT_SUCCESS
else:
rv = ImportStatus.IMPORT_NOCHANGE
if isinstance(lyrTransaction, bool):
# the transaction on lyr was already rolled back
lyrTransaction = False
except Exception: # pylint: disable=broad-exception-caught
rv = ImportStatus.IMPORT_ERROR
if isinstance(lyrTransaction, str):
query = 'ROLLBACK TO ' + lyrTransaction
logging.exception('Exception occured within transaction: %s', query)
# don't unset lyrTransaction here as we want to RELEASE SAVEPOINT
try:
dso.ExecuteSQL(query)
except Exception: # pylint: disable=broad-exception-caught
logging.exception('Could not execute SQL: %s', query)
elif isinstance(lyrTransaction, bool) and lyrTransaction:
logging.exception('Exception occured within transaction on output '
'layer "%s": ROLLBACK', layername)
lyrTransaction = None
try:
if lyr.RollbackTransaction() != ogr.OGRERR_NONE:
logging.error('Could not rollback transaction on layer "%s"', layername)
except Exception: # pylint: disable=broad-exception-caught
logging.exception('Could not rollback transaction on layer "%s"', layername)
else:
traceback.print_exc()
finally:
if isinstance(lyrTransaction, str):
query = 'RELEASE ' + lyrTransaction
logging.debug('%s', query)
try:
dso.ExecuteSQL(query)
except Exception: # pylint: disable=broad-exception-caught
rv = ImportStatus.IMPORT_ERROR
logging.exception('Could not execute SQL: %s', query)
elif isinstance(lyrTransaction, bool) and lyrTransaction:
try:
if lyr.CommitTransaction() != ogr.OGRERR_NONE:
rv = ImportStatus.IMPORT_ERROR
logging.error('Could not commit transaction')
except Exception: # pylint: disable=broad-exception-caught
rv = ImportStatus.IMPORT_ERROR
logging.exception('Could not commit transaction on layer "%s"', layername)
return rv
# pylint: disable-next=dangerous-default-value
def _importSource(lyr : ogr.Layer,
path : str = '/nonexistent',
unar : dict[str,Any]|None = None,
args : dict[str,Any] = {},
cachedir : Path|None = None,
extent : ogr.Geometry|None = None) -> None:
"""Import a source layer"""
if unar is None:
return _importSource2(lyr, path, args=args, basedir=cachedir, extent=extent)
ds_srcpath = Path(args['path'])
if ds_srcpath.is_absolute():
# treat absolute paths as relative to the archive root
logging.warning('%s is absolute, removing leading anchor', ds_srcpath)
ds_srcpath = ds_srcpath.relative_to(ds_srcpath.anchor)
ds_srcpath = str(ds_srcpath)
with tempfile.TemporaryDirectory() as tmpdir:
logging.debug('Created temporary directory %s', tmpdir)
extractArchive(Path(path) if cachedir is None else cachedir.joinpath(path),
tmpdir,
fmt=unar.get('format', None),
patterns=unar.get('patterns', None),
exact_matches=[ds_srcpath])
return _importSource2(lyr, ds_srcpath, args=args, basedir=Path(tmpdir), extent=extent)
def setFieldMapValue(fld : ogr.FieldDefn,
idx : int,
val : None|int|str|bytes|float) -> None|int|str|bytes|float:
"""Validate field value mapping."""
if val is None:
if not fld.IsNullable():
logging.warning('Field "%s" is not NULLable but remaps NULL', fld.GetName())
return None
fldType = fld.GetType()
if fldType in (ogr.OFTInteger, ogr.OFTInteger64):
if isinstance(val, int):
return val
elif fldType == ogr.OFTString:
if isinstance(val, str):
return val
elif fldType == ogr.OFTBinary:
if isinstance(val, bytes):
return val
elif fldType == ogr.OFTReal:
if isinstance(val, int):
return float(val)
if isinstance(val, float):
return val
raise RuntimeError(f'Field "{fld.GetName()}" mapping #{idx} has incompatible type '
f'for {ogr.GetFieldTypeName(fldType)}')
# pylint: disable-next=too-many-branches, too-many-locals, too-many-statements
def _importSource2(lyr_dst : ogr.Layer, path : str, args : dict[str,Any],
basedir : Path|None, extent : ogr.Geometry|None) -> None:
"""Import a source layer (already extracted)
This is more or less like ogr2ogr/GDALVectorTranslate() but we roll
out our own (slower) version because GDALVectorTranslate() insists in
calling StartTransaction() https://github.com/OSGeo/gdal/issues/3403
while we want a single transaction for the entire desination layer,
including truncation, source imports, and metadata changes."""
kwargs, _ = gdalSetOpenExArgs(args, flags=GDAL_OF_READONLY|GDAL_OF_VERBOSE_ERROR)
path2 = path if basedir is None else str(basedir.joinpath(path))
logging.debug('OpenEx(%s, %s)', path2, str(kwargs))
ds = gdal.OpenEx(path2, **kwargs)
if ds is None:
raise RuntimeError(f'Could not open {path2}')
layername = args.get('layername', None)
if layername is None:
idx = 0
lyr = ds.GetLayerByIndex(idx)
msg = '#' + str(idx)
if lyr is not None:
layername = lyr.GetName()
msg += ' ("' + layername + '")'
else:
lyr = ds.GetLayerByName(layername)
msg = '"' + layername + '"'
if lyr is None:
raise RuntimeError(f'Could not get requested layer {msg} from {path2}')
logging.info('Importing layer %s from "%s"', msg, path)
canIgnoreFields = lyr.TestCapability(ogr.OLCIgnoreFields)
srs = lyr.GetSpatialRef()
if srs is None:
raise RuntimeError('Source layer has no SRS')
srs_dst = lyr_dst.GetSpatialRef()
if srs_dst is None:
logging.warning('Destination has no SRS, skipping coordinate transformation')
ct = None
elif srs_dst.IsSame(srs):
logging.debug('Both source and destination have the same SRS (%s), '
'skipping coordinate transformation',
srs_dst.GetName())
ct = None
else:
# TODO Use GetSupportedSRSList() and SetActiveSRS() with GDAL ≥3.7.0
# when possible, see apps/ogr2ogr_lib.cpp
logging.debug('Creating transforming from source SRS (%s) to destination SRS (%s)',
srs.GetName(), srs_dst.GetName())
ct = osr.CoordinateTransformation(srs, srs_dst)
if ct is None:
raise RuntimeError(f'Could not create transformation from source SRS ({srs.GetName()}) '
f'to destination SRS ({srs_dst.GetName()})')
defn = lyr.GetLayerDefn()
geomFieldCount = defn.GetGeomFieldCount()
if geomFieldCount != 1:
# TODO Add support for multiple geometry fields (also in the fingerprinting logic below)
logging.warning('Source layer "%s" has %d != 1 geometry fields', layername, geomFieldCount)
fieldCount = defn.GetFieldCount()
fieldMap = [-1] * fieldCount
fields = args['field-map']
fieldSet = set()
ignoredFieldNames = []
for i in range(fieldCount):
fld = defn.GetFieldDefn(i)
fldName = fld.GetName()
fieldMap[i] = v = fields.get(fldName, -1)
fieldSet.add(fldName)
if v < 0 and canIgnoreFields:
# call SetIgnored() on unwanted source fields
logging.debug('Set Ignored=True on output field "%s"', fldName)
fld.SetIgnored(True)
ignoredFieldNames.append(fldName)
count0 = -1
if lyr.TestCapability(ogr.OLCFastFeatureCount):
count0 = lyr.GetFeatureCount(force=0)
if count0 == 0 and len(fieldSet) == 0:
# skip the below warning in some cases (e.g., GeoJSON source)
logging.info('Source layer "%s" has no fields nor features, skipping', layername)
return
logging.debug('Field map: %s', str(fieldMap))
for fld in fields:
if not fld in fieldSet:
logging.warning('Source layer "%s" has no field named "%s", ignoring', layername, fld)
count1 = -1
if args.get('spatial-filter', True) and extent is not None:
spatialFilter = getSpatialFilterFromGeometry(extent, srs)
logging.debug('Setting spatial filter to %s', spatialFilter.ExportToWkt())
lyr.SetSpatialFilter(spatialFilter)
if lyr.TestCapability(ogr.OLCFastFeatureCount):
count1 = lyr.GetFeatureCount(force=0)
if count0 >= 0:
if count1 >= 0:
logging.info('Source layer "%s" has %d features (%d of which intersecting extent)',
layername, count0, count1)
else:
logging.info('Source layer "%s" has %d features', layername, count0)
logging.info('Ignored fields from source layer: %s',
'-' if len(ignoredFieldNames) == 0 else ', '.join(ignoredFieldNames))
# build a list of triplets (field index, replacement_for_null, [(from_value, to_value), …])
valueMap = []
for fldName, rules in args.get('value-map', {}).items():
i = defn.GetFieldIndex(fldName)
if i < 0:
raise RuntimeError(f'Source layer "{layername}" has no field named "{fldName}"')
if fieldMap[i] < 0:
logging.warning('Ignored source field "%s" has value map', fldName)
continue
hasNullReplacement = False
nullReplacement = None
mapping = []
fld = defn.GetFieldDefn(i)
for idx, (rFrom, rTo) in enumerate(rules):
# use fld for both 'from' and 'to' (the types must match, casting is not
# allowed in the mapping)
if rFrom is None:
if hasNullReplacement:
logging.warning('Field "%s" has duplicate NULL replacement',
fld.GetName())
else:
setFieldMapValue(fld, idx, None) # validate NULL
rTo = setFieldMapValue(fld, idx, rTo)
hasNullReplacement = True
nullReplacement = rTo
elif isinstance(rFrom, re.Pattern):
# validate but keep the rFrom regex
setFieldMapValue(fld, idx, str(rFrom))
rTo = setFieldMapValue(fld, idx, rTo)
mapping.append( (rFrom, rTo, 1) )
else:
rFrom = setFieldMapValue(fld, idx, rFrom)
rTo = setFieldMapValue(fld, idx, rTo)
mapping.append( (rFrom, rTo, 0) )
if nullReplacement is not None or len(mapping) > 0:
valueMap.append( (i, nullReplacement, mapping) )
bValueMap = len(valueMap) > 0
defn = None
defn_dst = lyr_dst.GetLayerDefn()
eGType_dst = defn_dst.GetGeomType()
eGType_dst_HasZ = ogr.GT_HasZ(eGType_dst)
eGType_dst_HasM = ogr.GT_HasM(eGType_dst)
dGeomIsUnknown = ogr.GT_Flatten(eGType_dst) == ogr.wkbUnknown
if bValueMap:
valueMapCounts = [0] * fieldCount
featureCount = 0
mismatch = {}
feature = lyr.GetNextFeature()
while feature is not None:
if bValueMap:
for i, nullReplacement, mapping in valueMap:
if not feature.IsFieldSet(i):
continue
if feature.IsFieldNull(i):
if nullReplacement is not None:
# replace NULL with non-NULL value
feature.SetField(i, nullReplacement)
valueMapCounts[i] += 1
continue
v = feature.GetField(i)
for rFrom, rTo, rType in mapping:
if rType == 0:
# literal
if v != rFrom:
continue
elif rType == 1:
# regex
m = rFrom.fullmatch(v)
if m is None:
continue
if rTo is not None:
rTo = rTo.format(*m.groups())
else:
raise RuntimeError(str(rType))
if rTo is None:
# replace non-NULL value with NULL
feature.SetFieldNull(i)
else:
# replace non-NULL value with non-NULL value
feature.SetField(i, rTo)
valueMapCounts[i] += 1
break
feature2 = ogr.Feature(defn_dst)
feature2.SetFromWithMap(feature, False, fieldMap)
geom = feature2.GetGeometryRef()
if geom is None:
if eGType_dst != ogr.wkbNone:
logging.warning('Source feature #%d has no geometry, trying to transfer anyway',
feature.GetFID())
else:
if ct is not None and geom.Transform(ct) != ogr.OGRERR_NONE:
raise RuntimeError('Could not apply coordinate transformation')
eGType = geom.GetGeometryType()
if eGType != eGType_dst and not dGeomIsUnknown:
# Promote to multi, cf. apps/ogr2ogr_lib.cpp:ConvertType()
eGType2 = eGType
if eGType in (ogr.wkbTriangle, ogr.wkbTIN, ogr.wkbPolyhedralSurface):
eGType2 = ogr.wkbMultiPolygon
elif not ogr.GT_IsSubClassOf(eGType, ogr.wkbGeometryCollection):
eGType2 = ogr.GT_GetCollection(eGType)
eGType2 = ogr.GT_SetModifier(eGType2, eGType_dst_HasZ, eGType_dst_HasM)
if eGType2 == eGType_dst:
mismatch[eGType] = mismatch.get(eGType, 0) + 1
geom = ogr.ForceTo(geom, eGType_dst)
# TODO call MakeValid()?
else:
raise RuntimeError(f'Conversion from {ogr.GeometryTypeToName(eGType)} '
f'to {ogr.GeometryTypeToName(eGType_dst)} not implemented')
feature2.SetGeometryDirectly(geom)
if lyr_dst.CreateFeature(feature2) != ogr.OGRERR_NONE:
raise RuntimeError(f'Could not transfer source feature #{feature.GetFID()}')
featureCount += 1
feature = lyr.GetNextFeature()
if bValueMap:
valueMapCounts = [ (lyr.GetLayerDefn().GetFieldDefn(i).GetName(), k)
for i,k in enumerate(valueMapCounts) if k > 0 ]
lyr = None
logging.info('Imported %d features from source layer "%s"', featureCount, layername)
if bValueMap:
if len(valueMapCounts) > 0:
valueMapCounts = ', '.join([ str(k) + '× "' + n + '"' for n,k in valueMapCounts ])
else:
valueMapCounts = '-'
logging.info('Field substitutions: %s', valueMapCounts)
if len(mismatch) > 0:
mismatches = [ str(n) + '× ' + ogr.GeometryTypeToName(t)
for t,n in sorted(mismatch.items(), key=lambda x: x[1]) ]
logging.info('Forced conversion to %s: %s',
ogr.GeometryTypeToName(eGType_dst), ', '.join(mismatches))
def listFieldsOrderBy(defn : ogr.FeatureDefn,
unique : bool|None = None,
nullable : bool|None = None) -> Iterator[str]:
"""Return an iterator of column names suitable for ORDER BY."""
fields_str = {}
for i in range(defn.GetFieldCount()):
fld = defn.GetFieldDefn(i)
if (fld.IsIgnored() or
# if 'unique' or 'unable' is not None then skip the field
# unless the boolean matches .IsUnique() resp. .IsNullable()
not (unique is None or fld.IsUnique() == unique) or
not (nullable is None or fld.IsNullable() == nullable)):
continue
if fld.GetType() in (ogr.OFTInteger, ogr.OFTInteger64):
# list integers first
yield fld.GetName()
elif fld.GetType() == ogr.OFTString:
w = fld.GetWidth()
if 0 < w < 256:
# only consider short-ish strings
fields_str[fld.GetName()] = w
# order string columns by width
for c,_ in sorted(fields_str.items(), key=lambda x:x[1]):
yield c
# pylint: disable-next=too-many-branches, too-many-statements
def updateLayerCache(ds : gdal.Dataset, lyr : ogr.Layer, cache : ogr.Layer,
last_updated : datetime,
lyrTransaction : str|bool|None = None,
force : bool = False) -> bool:
"""Update attributes in the layer cache for the given layer name.
Return a boolean indicating whether changes to layername were *not*
rolled back (hence might still be outstanding in the transaction)."""
layername = lyr.GetName()
dgst = sha256()
defn = lyr.GetLayerDefn()
fields = []
for i in range(defn.GetFieldCount()):
fields.append('t.' + escape_identifier(defn.GetFieldDefn(i).GetName()))
if len(fields) == 0:
fields = ['0 AS hash_properties']
else:
fields = [ 'hash_record_extended(ROW(' + ','.join(fields) + '),0) AS hash_properties' ]
fidColumn = lyr.GetFIDColumn()
if fidColumn is None or fidColumn == '':
raise RuntimeError(f'Couldn\'t find FID column for "{layername}"')
# defn.GetGeomFieldCount() != 1 is not supported and yields a warning in _importSource2()
geometryColumn = lyr.GetGeometryColumn()
if geometryColumn is None or geometryColumn == '':
raise RuntimeError(f'Couldn\'t find geometry column for "{layername}"')
fields.append('sha256(COALESCE(' +
'ST_AsEWKB(t.' + escape_identifier(geometryColumn) + '),' +
'\'\')) AS hash_geom')
if len(fields) == 0:
raise RuntimeError('Empty field list in SELECT')
query = 'SELECT ' + ','.join(fields) + ' FROM ' + escape_identifier(layername) + ' t'
sort_by = next(listFieldsOrderBy(defn, unique=True, nullable=False), None)
if sort_by is not None:
sort_by = [ sort_by ]
else:
count = lyr.GetFeatureCount(force=0)
if count is None or count < 0 or count > 5000:
logging.warning('Layer "%s" has many (%s) features but no UNIQUE NOT NULL constraint, '
'sorting might be unstable and slow', layername,
str(count) if (count is not None and count >= 0) else 'N/A')
sort_by = list(listFieldsOrderBy(defn)) + [ geometryColumn, fidColumn ]
query += ' ORDER BY ' + ','.join(['t.' + escape_identifier(c) for c in sort_by])
struct_dgst : Final = struct.Struct('@qq').pack
logging.debug('%s', query)
lyr2 = ds.ExecuteSQL(query)
try:
assert lyr2.GetLayerDefn().GetFieldDefn(0).GetName() == 'hash_properties'
assert lyr2.GetLayerDefn().GetFieldDefn(1).GetName() == 'hash_geom'
feature = lyr2.GetNextFeature()
while feature is not None:
dgst.update(struct_dgst(feature.GetFID(), feature.GetFieldAsInteger64(0)))
dgst.update(feature.GetFieldAsBinary(1))
feature = lyr2.GetNextFeature()
finally:
ds.ReleaseResultSet(lyr2)
lyr2 = None
fingerprint = dgst.digest()
attributeFilter = 'layername = ' + escape_literal_str(layername)
logging.debug('SetAttributeFilter("%s", "%s")', cache.GetName(), attributeFilter)
cache.SetAttributeFilter(attributeFilter)
feature = cache.GetNextFeature()
if feature is None:
# not in cache
logging.debug('Creating new feature in layer cache for %s', attributeFilter)
update = False
feature = ogr.Feature(cache.GetLayerDefn())
feature.SetFieldString(0, layername)
fingerprint_old = None
else:
logging.debug('Updating existing feature in layer cache for %s', attributeFilter)
update = True
fingerprint_old = feature.GetFieldAsBinary(2) if feature.IsFieldSetAndNotNull(2) else None
assert cache.GetNextFeature() is None
if not gdalVersionMin(maj=3, min=8):
tzFlag = 0 # ogr.TZFLAG_UNKNOWN
elif last_updated.tzinfo == UTC:
tzFlag = ogr.TZFLAG_UTC
else:
td = last_updated.utcoffset()
# 15min increments/decrements per unit above/below UTC, cf.
# https://gdal.org/en/stable/api/vector_c_api.html#c.OGR_TZFLAG_UTC
tzFlag = td.days * 96 + td.seconds // 900
if timedelta(seconds=tzFlag*900) != td or abs(tzFlag) > 56: # max ±14:00
raise RuntimeError(f'Invalid UTC offset {td}')
tzFlag += ogr.TZFLAG_UTC
feature.SetField(1, last_updated.year,
last_updated.month,
last_updated.day,
last_updated.hour,
last_updated.minute,
float(last_updated.second) + float(last_updated.microsecond)/1000000.,
tzFlag)
if fingerprint is None:
feature.SetFieldNull(2)
else:
# https://lists.osgeo.org/pipermail/gdal-dev/2020-December/053170.html
feature.SetFieldBinaryFromHexString(2, fingerprint.hex())
ret = True
if update:
if (fingerprint is None or fingerprint_old is None or fingerprint != fingerprint_old):
logging.info('Updated layer "%s" has new fingerprint %s', layername,
fingerprint.hex()[:8] if fingerprint is not None else 'N/A')
elif force:
logging.info('Updated layer "%s" has identical fingerprint %s',
layername, fingerprint.hex()[:8])
else:
# no change: rollback (*before* updating the cache) if possible to retain FID values
if isinstance(lyrTransaction, str):
logging.info('Updated layer "%s" has identical fingerprint %s, rolling back',
layername, fingerprint.hex()[:8])
query = 'ROLLBACK TO ' + lyrTransaction
logging.debug('%s', query)
try:
ds.ExecuteSQL(query)
except Exception: # pylint: disable=broad-exception-caught
logging.exception('Could not execute SQL: %s', query)
else:
ret = False
elif isinstance(lyrTransaction, bool) and lyrTransaction:
logging.info('Updated layer "%s" has identical fingerprint %s, rolling back',
layername, fingerprint.hex()[:8])
try:
if lyr.RollbackTransaction() == ogr.OGRERR_NONE:
ret = False
else:
logging.error('Could not rollback transaction on layer "%s"',
layername)
except Exception: # pylint: disable=broad-exception-caught
logging.exception('Could not rollback transaction on layer "%s"',
layername)
else:
logging.info('Updated layer "%s" has identical fingerprint %s',
layername, fingerprint.hex()[:8])
# TODO with gdal 3.7 and OLCUpdateFeature capability, use UpdateFeature() instead
if cache.SetFeature(feature) != ogr.OGRERR_NONE:
raise RuntimeError('Could not update feature in layer cache')
else:
if cache.CreateFeature(feature) != ogr.OGRERR_NONE:
raise RuntimeError('Could not create new feature in layer cache')
# force the PG driver to call EndCopy() to detect errors and trigger a
# rollback if needed
ds.FlushCache()
return ret
|