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|
#!/usr/bin/python3
#----------------------------------------------------------------------
# Backend utilities for the Klimatanalys Norr project (extract/import layers)
# Copyright © 2024 Guilhem Moulin <info@guilhem.se>
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <https://www.gnu.org/licenses/>.
#----------------------------------------------------------------------
from os import O_WRONLY, O_CREAT, O_TRUNC, O_CLOEXEC
import os
from fcntl import flock, LOCK_EX
import logging
import argparse
import tempfile
import re
import math
from fnmatch import fnmatchcase
from pathlib import Path
from osgeo import gdal, ogr, osr
from osgeo.gdalconst import (
OF_VECTOR as GDAL_OF_VECTOR,
OF_ALL as GDAL_OF_ALL,
OF_READONLY as GDAL_OF_READONLY,
OF_UPDATE as GDAL_OF_UPDATE,
OF_VERBOSE_ERROR as GDAL_OF_VERBOSE_ERROR,
CE_None as GDAL_CE_None,
DCAP_CREATE as GDAL_DCAP_CREATE,
DCAP_DEFAULT_FIELDS as GDAL_DCAP_DEFAULT_FIELDS,
DCAP_NOTNULL_FIELDS as GDAL_DCAP_NOTNULL_FIELDS,
DCAP_UNIQUE_FIELDS as GDAL_DCAP_UNIQUE_FIELDS,
)
import osgeo.gdalconst as gdalconst
gdal.UseExceptions()
import common
from common import gdalSetOpenExArgs, gdalGetMetadataItem, gdalVersionMin, escapeIdentifier
# Open and return the output DS. It is created if create=False or
# create-options is a non-empty dictionary.
def openOutputDS(def_dict):
path = def_dict['path']
kwargs, drv = gdalSetOpenExArgs(def_dict, flags=GDAL_OF_UPDATE|GDAL_OF_VERBOSE_ERROR)
try:
logging.debug('OpenEx(%s, %s)', path, str(kwargs))
return gdal.OpenEx(path, **kwargs)
except RuntimeError as e:
if not (gdal.GetLastErrorType() >= gdalconst.CE_Failure and
gdal.GetLastErrorNo() == gdalconst.CPLE_OpenFailed):
# not an open error
raise e
dso2 = None
try:
dso2 = gdal.OpenEx(path, nOpenFlags=GDAL_OF_ALL | GDAL_OF_UPDATE)
except Exception:
pass
if dso2 is not None:
# path exists but can't be open with OpenEx(path, **kwargs)
raise e
try:
dso2 = gdal.OpenEx(path, nOpenFlags=GDAL_OF_ALL)
except Exception:
pass
if dso2 is not None:
# path exists but can't be open with OpenEx(path, **kwargs)
raise e
dsco = def_dict.get('create-options', None)
if not def_dict.get('create', False) and dsco is None:
# not configured for creation
raise e
if drv is None or not gdalGetMetadataItem(drv, GDAL_DCAP_CREATE):
# not capable of creation
raise e
if 'open_options' in kwargs:
# like ogr2ogr(1)
logging.warning('Destination\'s open options ignored ' +
'when creating the output datasource')
kwargs2 = { 'eType': gdal.GDT_Unknown }
if dsco is not None:
kwargs2['options'] = [ k + '=' + str(v) for k, v in dsco.items() ]
logging.debug('Create(%s, %s, eType=%s%s)', drv.ShortName, path, kwargs2['eType'],
', options=' + str(kwargs2['options']) if 'options' in kwargs2 else '')
# XXX racy, a GDAL equivalent of O_EXCL would be nice
return drv.Create(path, 0, 0, 0, **kwargs2)
# cf. ogr/ogrgeometry.cpp:OGRFromOGCGeomType()
def fromGeomTypeName(name):
name = name.upper()
isMeasured = False
if name.endswith('M'):
isMeasured = True
name = name.removesuffix('M')
convertTo3D = False
if name.endswith('Z'):
convertTo3D = True
name = name.removesuffix('Z')
if name == 'POINT':
eGType = ogr.wkbPoint
elif name == 'LINESTRING':
eGType = ogr.wkbLineString
elif name == 'POLYGON':
eGType = ogr.wkbPolygon
elif name == 'MULTIPOINT':
eGType = ogr.wkbMultiPoint
elif name == 'MULTILINESTRING':
eGType = ogr.wkbMultiLineString
elif name == 'MULTIPOLYGON':
eGType = ogr.wkbMultiPolygon
elif name == 'GEOMETRYCOLLECTION':
eGType = ogr.wkbGeometryCollection
elif name == 'CIRCULARSTRING':
eGType = ogr.wkbCircularString
elif name == 'COMPOUNDCURVE':
eGType = ogr.wkbCompoundCurve
elif name == 'CURVEPOLYGON':
eGType = ogr.wkbCurvePolygon
elif name == 'MULTICURVE':
eGType = ogr.wkbMultiCurve
elif name == 'MULTISURFACE':
eGType = ogr.wkbMultiSurface
elif name == 'TRIANGLE':
eGType = ogr.wkbTriangle
elif name == 'POLYHEDRALSURFACE':
eGType = ogr.wkbPolyhedralSurface
elif name == 'TIN':
eGType = ogr.wkbTIN
elif name == 'CURVE':
eGType = ogr.wkbCurve
elif name == 'SURFACE':
eGType = ogr.wkbSurface
else:
eGType = ogr.wkbUnknown
if convertTo3D:
eGType = ogr.GT_SetZ(eGType)
if isMeasured:
eGType = ogr.GT_SetM(eGType)
return eGType
# Parse geometry type, cf. ogr2ogr_lib.cpp
def parseGeomType(name):
if name is None:
return ogr.wkbUnknown
name2 = name.upper()
is3D = False
if name2.endswith('25D'):
name2 = name2[:-3] # alias
is3D = True
elif name2.endswith('Z'):
name2 = name2[:-1]
is3D = True
if name2 == 'NONE':
eGType = ogr.wkbNone
elif name2 == 'GEOMETRY':
eGType = ogr.wkbUnknown
else:
eGType = fromGeomTypeName(name2)
if eGType == ogr.wkbUnknown:
raise Exception(f'Unknown geometry type "{name}"')
if eGType != ogr.wkbNone and is3D:
eGType = ogr.GT_SetZ(eGType)
return eGType
# cf. ogr/ogr_core.h's enum OGRFieldType;
def parseFieldType(name):
if name is None:
raise Exception('parseFieldType(None)')
name2 = name.lower()
if name2 == 'integer':
# simple 32bit integer
return ogr.OFTInteger
elif name2 == 'integerlist':
# List of 32bit integers
return ogr.OFTIntegerList
elif name2 == 'real':
# Double Precision floating point
return ogr.OFTReal
elif name2 == 'reallist':
# List of doubles
return ogr.OFTRealList
elif name2 == 'string':
# String of ASCII chars
return ogr.OFTString
elif name2 == 'stringlist':
# Array of strings
return ogr.OFTStringList
elif name2 == 'binary':
# Raw Binary data
return ogr.OFTBinary
elif name2 == 'date':
# Date
return ogr.OFTDate
elif name2 == 'time':
# Time
return ogr.OFTTime
elif name2 == 'datetime':
# Date and Time
return ogr.OFTDateTime
elif name2 == 'integer64':
# Single 64bit integer
return ogr.OFTInteger64
elif name2 == 'integer64list':
# List of 64bit integers
return ogr.OFTInteger64List
else:
raise Exception(f'Unknown field type "{name}"')
# cf. ogr/ogr_core.h's enum OGRFieldSubType;
def parseSubFieldType(name):
if name is None:
raise Exception('parseSubFieldType(None)')
name2 = name.lower()
if name2 == 'none':
# No subtype. This is the default value.
return ogr.OFSTNone
elif name2 == 'bool':
# Boolean integer. Only valid for OFTInteger and OFTIntegerList.
return ogr.OFSTBoolean
elif name2 == 'int16':
# Signed 16-bit integer. Only valid for OFTInteger and OFTIntegerList.
return ogr.OFSTInt16
elif name2 == 'float32':
# Single precision (32 bit) floating point. Only valid for OFTReal and OFTRealList.
return ogr.OFSTFloat32
elif name2 == 'json':
# JSON content. Only valid for OFTString.
return ogr.OFSTJSON
elif name2 == 'uuid':
# UUID string representation. Only valid for OFTString.
return ogr.OFSTUUID
else:
raise Exception(f'Unknown field subtype "{name}"')
# Parse timezone
TZ_RE = re.compile(r'(?:UTC\b)?([\+\-]?)([0-9][0-9]):?([0-9][0-9])', flags=re.IGNORECASE)
def parseTimeZone(tz):
if tz is None:
raise Exception('parseTimeZone(None)')
tz2 = tz.lower()
if tz2 == 'none':
return ogr.TZFLAG_UNKNOWN
elif tz2 == 'local':
return ogr.TZFLAG_LOCALTIME
elif tz2 == 'utc' or tz2 == 'gmt':
return ogr.TZFLAG_UTC
m = TZ_RE.fullmatch(tz)
if m is None:
raise Exception(f'Invalid timezone "{tz}"')
tzSign = m.group(1)
tzHour = int(m.group(2))
tzMinute = int(m.group(3))
if tzHour > 14 or tzMinute >= 60 or tzMinute % 15 != 0:
raise Exception(f'Invalid timezone "{tz}"')
tzFlag = tzHour*4 + int(tzMinute/15)
if tzSign == '-':
tzFlag = 100 - tzFlag
else:
tzFlag += 100
return tzFlag
# Pretty-print timezone flag, cf.
# ogr/ogrutils.cpp:OGRGetISO8601DateTime()
def formatTZFlag(tzFlag):
if tzFlag is None:
raise Exception('printTimeZone(None)')
if tzFlag == ogr.TZFLAG_UNKNOWN:
return 'none'
elif tzFlag == ogr.TZFLAG_LOCALTIME:
return 'local'
elif tzFlag == ogr.TZFLAG_UTC:
return 'UTC'
tzOffset = abs(tzFlag - 100) * 15;
tzHour = int(tzOffset / 60);
tzMinute = int(tzOffset % 60);
tzSign = '+' if tzFlag > 100 else '-'
return f'{tzSign}{tzHour:02}{tzMinute:02}'
def setFieldIf(cond, attrName, val, data, fldName, drvName, log=logging.warning):
if cond:
data[attrName] = val
else:
if isinstance(val, str):
val2 = '"' + val + '"'
else:
val2 = str(val)
log('Ignoring %s=%s on field "%s" (not supported by %s driver)',
attrName, val2, fldName, drvName)
# Validate layer creation options and schema. The schema is modified in
# place with the parsed result.
# (We need the driver of the output dataset to determine capability on
# constraints.)
def validateSchema(layers, drvo=None, lco_defaults=None):
# Cf. https://github.com/OSGeo/gdal/blob/master/NEWS.md
if gdalVersionMin(maj=3, min=7):
# list of capability flags supported by the CreateField() API
drvoFieldDefnFlags = drvo.GetMetadataItem(gdalconst.DMD_CREATION_FIELD_DEFN_FLAGS)
drvoFieldDefnFlags = drvoFieldDefnFlags.split(' ') if drvoFieldDefnFlags is not None else []
drvoSupportsFieldComment = 'Comment' in drvoFieldDefnFlags
# GetTZFlag()/SetTZFlag() and OGR_TZFLAG_* constants added in 3.8.0
hasTZFlagSupport = gdalVersionMin(maj=3, min=8)
else:
# list of flags supported by the OGRLayer::AlterFieldDefn() API
drvoFieldDefnFlags = drvo.GetMetadataItem(gdalconst.DMD_ALTER_FIELD_DEFN_FLAGS)
drvoFieldDefnFlags = drvoFieldDefnFlags.split(' ') if drvoFieldDefnFlags is not None else []
# GetComment()/SetComment() added in 3.7.0
drvoSupportsFieldComment = False
hasTZFlagSupport = False
# cache driver capabilities
drvoSupportsFieldWidthPrecision = 'WidthPrecision' in drvoFieldDefnFlags
drvoSupportsFieldNullable = 'Nullable' in drvoFieldDefnFlags and gdalGetMetadataItem(drvo, GDAL_DCAP_NOTNULL_FIELDS)
drvoSupportsFieldUnique = 'Unique' in drvoFieldDefnFlags and gdalGetMetadataItem(drvo, GDAL_DCAP_UNIQUE_FIELDS)
drvoSupportsFieldDefault = 'Default' in drvoFieldDefnFlags and gdalGetMetadataItem(drvo, GDAL_DCAP_DEFAULT_FIELDS)
drvoSupportsFieldAlternativeName = 'AlternativeName' in drvoFieldDefnFlags
for layername, layerdef in layers.items():
create = layerdef.get('create', None)
if create is None or len(create) < 1:
logging.warning('Layer "%s" has no creation schema', layername)
continue
# prepend global layer creation options (dataset:create-layer-options)
# and build the option=value list
lco = create.get('options', None)
if lco_defaults is not None or lco is not None:
options = []
if lco_defaults is not None:
options += [ k + '=' + str(v) for k, v in lco_defaults.items() ]
if lco is not None:
options += [ k + '=' + str(v) for k, v in lco.items() ]
create['options'] = options
# parse geometry type
create['geometry-type'] = parseGeomType(create.get('geometry-type', None))
fields = create.get('fields', None)
if fields is None:
create['fields'] = []
else:
fields_set = set()
for idx, fld_def in enumerate(fields):
fld_name = fld_def.get('name', None)
if fld_name is None or fld_name == '':
raise Exception(f'Field #{idx} has no name')
if fld_name in fields_set:
raise Exception(f'Duplicate field "{fld_name}"')
fields_set.add(fld_name)
fld_def2 = { 'Name': fld_name }
for k, v in fld_def.items():
k2 = k.lower()
if k2 == 'name':
pass
elif k2 == 'alternativename' or k2 == 'alias':
setFieldIf(drvoSupportsFieldAlternativeName,
'AlternativeName', v, fld_def2, fld_name, drvo.ShortName,
log=logging.debug)
elif k2 == 'comment':
setFieldIf(drvoSupportsFieldComment,
'Comment', v, fld_def2, fld_name, drvo.ShortName,
log=logging.debug)
elif k2 == 'type':
fld_def2['Type'] = parseFieldType(v)
elif k2 == 'subtype':
fld_def2['SubType'] = parseSubFieldType(v)
elif k2 == 'tz':
if hasTZFlagSupport:
fld_def2['TZFlag'] = parseTimeZone(v)
else:
logging.debug('Ignoring TZ="%s" on field "%s" (OGR v%s is too old)',
v, fld_name, gdal.__version__)
elif k2 == 'width' and v is not None and isinstance(v, int):
setFieldIf(drvoSupportsFieldWidthPrecision,
'Width', v, fld_def2, fld_name, drvo.ShortName)
elif k2 == 'precision' and v is not None and isinstance(v, int):
setFieldIf(drvoSupportsFieldWidthPrecision,
'Precision', v, fld_def2, fld_name, drvo.ShortName)
# constraints
elif k2 == 'default':
setFieldIf(drvoSupportsFieldDefault,
'Default', v, fld_def2, fld_name, drvo.ShortName)
elif k2 == 'nullable' and v is not None and isinstance(v, bool):
setFieldIf(drvoSupportsFieldNullable,
'Nullable', v, fld_def2, fld_name, drvo.ShortName)
elif k2 == 'unique' and v is not None and isinstance(v, bool):
setFieldIf(drvoSupportsFieldUnique,
'Unique', v, fld_def2, fld_name, drvo.ShortName)
else:
raise Exception(f'Field "{fld_name}" has unknown key "{k}"')
fields[idx] = fld_def2
# Validate the output layer against the provided SRS and creation options
def validateOutputLayer(lyr, srs=None, options=None):
ok = True
# ensure the output SRS is equivalent
if srs is not None:
srs2 = lyr.GetSpatialRef()
# cf. apps/ogr2ogr_lib.cpp
srs_options = [
'IGNORE_DATA_AXIS_TO_SRS_AXIS_MAPPING=YES',
'CRITERION=EQUIVALENT'
]
if not srs.IsSame(srs2, srs_options):
logging.warning('Output layer "%s" has SRS %s,\nexpected %s',
lyr.GetName(),
srs2.ExportToPrettyWkt(),
srs.ExportToPrettyWkt())
ok = False
if options is None:
return ok
layerDefn = lyr.GetLayerDefn()
n = layerDefn.GetGeomFieldCount()
if n != 1:
logging.warning('Output layer "%s" has %d != 1 geometry fields', layername, n)
geom_type1 = lyr.GetGeomType()
geom_type2 = options['geometry-type']
if geom_type1 != geom_type2:
logging.warning('Output layer "%s" has geometry type #%d (%s), expected #%d (%s)',
lyr.GetName(),
geom_type1, ogr.GeometryTypeToName(geom_type1),
geom_type2, ogr.GeometryTypeToName(geom_type2))
ok = False
fields = options.get('fields', None)
if fields is not None:
for fld in fields:
fldName = fld['Name']
idx = layerDefn.GetFieldIndex(fldName)
if idx < 0:
logging.warning('Output layer "%s" has no field named "%s"',
lyr.GetName(), fldName)
ok = False
continue
defn = layerDefn.GetFieldDefn(idx)
if 'AlternativeName' in fld:
v1 = defn.GetAlternativeName()
v2 = fld['AlternativeName']
if v1 != v2:
logging.warning('Field "%s" has AlternativeName="%s", expected "%s"',
fldName, v1, v2)
ok = False
if 'Comment' in fld:
v1 = defn.GetComment()
v2 = fld['Comment']
if v1 != v2:
logging.warning('Field "%s" has Comment="%s", expected "%s"',
fldName, v1, v2)
ok = False
if 'Type' in fld:
v1 = defn.GetType()
v2 = fld['Type']
if v1 != v2:
logging.warning('Field "%s" has Type=%d (%s), expected %d (%s)',
fldName,
v1, ogr.GetFieldTypeName(v1),
v2, ogr.GetFieldTypeName(v2))
ok = False
if 'SubType' in fld:
v1 = defn.GetSubType()
v2 = fld['SubType']
if v1 != v2:
logging.warning('Field "%s" has SubType=%d (%s), expected %d (%s)',
fldName,
v1, ogr.GetFieldSubTypeName(v1),
v2, ogr.GetFieldSubTypeName(v2))
ok = False
if 'TZFlag' in fld:
v1 = defn.GetTZFlag()
v2 = fld['TZFlag']
if v1 != v2:
logging.warning('Field "%s" has TZFlag=%d (%s), expected %d (%s)',
fldName, v1, formatTZFlag(v1), v2, formatTZFlag(v2))
ok = False
if 'Precision' in fld:
v1 = defn.GetPrecision()
v2 = fld['Precision']
if v1 != v2:
logging.warning('Field "%s" has Precision=%d, expected %d',
fldName, v1, v2)
ok = False
if 'Width' in fld:
v1 = defn.GetWidth()
v2 = fld['Width']
if v1 != v2:
logging.warning('Field "%s" has Width=%d, expected %d',
fldName, v1, v2)
ok = False
if 'Default' in fld:
v1 = defn.GetDefault()
v2 = fld['Default']
if v1 != v2:
logging.warning('Field "%s" has Default="%s", expected "%s"',
fldName, v1, v2)
ok = False
if 'Nullable' in fld:
v1 = bool(defn.IsNullable())
v2 = fld['Nullable']
if v1 != v2:
logging.warning('Field "%s" has Nullable=%s, expected %s',
fldName, v1, v2)
ok = False
if 'Unique' in fld:
v1 = bool(defn.IsUnique())
v2 = fld['Unique']
if v1 != v2:
logging.warning('Field "%s" has Unique=%s, expected %s',
fldName, v1, v2)
ok = False
return ok
# Create output layer
def createOutputLayer(ds, layername, srs=None, options=None):
logging.info('Creating new destination layer "%s"', layername)
geom_type = options['geometry-type']
lco = options.get('options', None)
drv = ds.GetDriver()
if geom_type != ogr.wkbNone and drv.ShortName == 'PostgreSQL':
# “Important to set to 2 for 2D layers as it has constraints on the geometry
# dimension during loading.”
# — https://gdal.org/drivers/vector/pg.html#layer-creation-options
if ogr.GT_HasM(geom_type):
if ogr.GT_HasZ(geom_type):
dim = 'XYZM'
else:
dim = 'XYM'
elif ogr.GT_HasZ(geom_type):
dim = '3'
else:
dim = '2'
if lco is None:
lco = []
lco = ['dim=' + dim] + lco # prepend dim=
kwargs = { 'geom_type': geom_type }
if srs is not None:
kwargs['srs'] = srs
if lco is not None:
kwargs['options'] = lco
logging.debug('CreateLayer(%s, geom_type="%s"%s%s)', layername,
ogr.GeometryTypeToName(geom_type),
', srs="' + kwargs['srs'].GetName() + '"' if 'srs' in kwargs else '',
', options=' + str(kwargs['options']) if 'options' in kwargs else '')
lyr = dso.CreateLayer(layername, **kwargs)
if lyr is None:
raise Exception(f'Could not create destination layer "{layername}"')
# TODO use CreateLayerFromGeomFieldDefn() from ≥v3.9 as it's not
# possible to toggle the geomfield's nullable property after fact
# otherwise
fields = options['fields']
if len(fields) > 0 and not lyr.TestCapability(ogr.OLCCreateField):
raise Exception(f'Destination layer "{layername}" lacks field creation capability')
# set up output schema
for fld in fields:
fldName = fld['Name']
defn = ogr.FieldDefn()
defn.SetName(fldName)
if 'AlternativeName' in fld:
v = fld['AlternativeName']
logging.debug('Set AlternativeName="%s" on output field "%s"', str(v), fldName)
defn.SetAlternativeName(v)
if 'Comment' in fld:
v = fld['Comment']
logging.debug('Set Comment="%s" on output field "%s"', str(v), fldName)
defn.SetComment(v)
if 'Type' in fld:
v = fld['Type']
logging.debug('Set Type=%d (%s) on output field "%s"',
v, ogr.GetFieldTypeName(v), fldName)
defn.SetType(v)
if 'SubType' in fld:
v = fld['SubType']
logging.debug('Set SubType=%d (%s) on output field "%s"',
v, ogr.GetFieldSubTypeName(v), fldName)
defn.SetSubType(v)
if 'TZFlag' in fld:
v = fld['TZFlag']
logging.debug('Set TZFlag=%d (%s) on output field "%s"',
v, formatTZFlag(v), fldName)
defn.SetTZFlag(v)
if 'Precision' in fld:
v = fld['Precision']
logging.debug('Set Precision=%d on output field "%s"', v, fldName)
defn.SetPrecision(v)
if 'Width' in fld:
v = fld['Width']
logging.debug('Set Width=%d on output field "%s"', v, fldName)
defn.SetWidth(v)
if 'Default' in fld:
v = fld['Default']
logging.debug('Set Default=%s on output field "%s"', v, fldName)
defn.SetDefault(v)
if 'Nullable' in fld:
v = fld['Nullable']
logging.debug('Set Nullable=%s on output field "%s"', v, fldName)
defn.SetNullable(v)
if 'Unique' in fld:
v = fld['Unique']
logging.debug('Set Unique=%s on output field "%s"', v, fldName)
defn.SetUnique(v)
if lyr.CreateField(defn, approx_ok=False) != GDAL_CE_None:
raise Exception('Could not create field "{fldName}"')
logging.debug('Added field "%s" to output layer "%s"', fldName, layername)
# flush before calling StartTransaction() so we're not tryingn to
# rollback changes on a non-existing table
lyr.SyncToDisk()
return lyr
# Setup output field mapping, modifying the sources dictionary in place.
def setOutputFieldMap(defn, sources):
fieldMap = {}
n = defn.GetFieldCount()
for i in range(n):
fld = defn.GetFieldDefn(i)
fldName = fld.GetName()
fieldMap[fldName] = i
for source in sources:
source_import = source['import']
fieldMap2 = source_import.get('field-map', None)
if fieldMap2 is None:
fieldMap2 = fieldMap
else:
if isinstance(fieldMap2, list):
# convert list to identity dictionary
fieldMap2 = { fld: fld for fld in fieldMap2 }
for ifld, ofld in fieldMap2.items():
i = fieldMap.get(ofld, None)
if i is None:
raise Exception(f'Ouput layer has no field named "{ofld}"')
fieldMap2[ifld] = i
source_import['field-map'] = fieldMap2
# validate field value mapping
valueMap = source_import.get('value-map', None)
if valueMap is not None:
for fldName, rules in valueMap.items():
if rules is None:
continue
if not isinstance(rules, list):
rules = [rules]
for idx, rule in enumerate(rules):
if rule is None or not isinstance(rule, dict):
raise Exception(f'Field "{fldName}" has invalid rule #{idx}: {rule}')
if 'type' not in rule:
ruleType = rule['type'] = 'literal'
else:
ruleType = rule['type']
if ('replace' not in rule or 'with' not in rule or len(rule) != 3 or
ruleType is None or ruleType not in ['literal', 'regex']):
raise Exception(f'Field "{fldName}" has invalid rule #{idx}: {rule}')
if ruleType == 'regex':
rule['replace'] = re.compile(rule['replace'])
rules[idx] = ( rule['replace'], rule['with'] )
# Clear the given layer (wipe all its features)
def clearLayer(ds, lyr):
n = -1
if lyr.TestCapability(ogr.OLCFastFeatureCount):
n = lyr.GetFeatureCount(force=0)
if n == 0:
# nothing to clear, we're good
return
layername_esc = escapeIdentifier(lyr.GetName())
# XXX GDAL <3.9 doesn't have lyr.GetDataset() so we pass the DS along with the layer
drv = ds.GetDriver()
if drv.ShortName == 'PostgreSQL':
# https://www.postgresql.org/docs/15/sql-truncate.html
query = 'TRUNCATE TABLE {table} CONTINUE IDENTITY RESTRICT'
op = 'Truncating'
else:
query = 'DELETE FROM {table}'
op = 'Clearing'
logging.info('%s table %s (former feature count: %s)', op,
layername_esc, str(n) if n >= 0 else 'unknown')
ds.ExecuteSQL(query.format(table=layername_esc))
# Extract an archive file into the given destination directory.
def extractArchive(path, destdir, fmt=None, patterns=None, exact_matches=None):
if fmt is None:
suffix = path.suffix
if suffix is None or suffix == '' or not suffix.startswith('.'):
raise Exception(f'Could not infer archive format from "{path}"')
fmt = suffix.removeprefix('.')
fmt = fmt.lower()
logging.debug('Unpacking %s archive %s into %s', fmt, path, destdir)
if fmt == 'zip':
from zipfile import ZipFile
logging.debug('Opening %s as ZipFile', path)
with ZipFile(path, mode='r') as z:
namelist = listArchiveMembers(z.namelist(),
patterns=patterns, exact_matches=exact_matches)
z.extractall(path=destdir, members=namelist)
else:
raise Exception(f'Unknown archive format "{fmt}"')
# List archive members matching the given parterns and/or exact matches
def listArchiveMembers(namelist, patterns, exact_matches=None):
if patterns is None and exact_matches is None:
# if neither patterns nor exact_matches are given we'll extract the entire archive
return namelist
if patterns is None:
patterns = []
if exact_matches is None:
exact_matches = []
members = []
for name in namelist:
ok = False
if name in exact_matches:
# try exact matches first
logging.debug('Listed archive member %s (exact match)', name)
members.append(name)
ok = True
continue
# if there are no exact matches, try patterns one by one in the supplied order
for pat in patterns:
if fnmatchcase(name, pat):
logging.debug('Listed archive member %s (matching pattern "%s")', name, pat)
members.append(name)
ok = True
break
if not ok:
logging.debug('Ignoring archive member %s', name)
return members
# Import a source layer
def importSource(lyr, path=None, unar=None, args={}, cachedir=None, extent=None):
if unar is None:
return importSource2(lyr, str(path), args=args,
basedir=cachedir, extent=extent)
if cachedir is not None:
path = cachedir.joinpath(path)
ds_srcpath = Path(args['path'])
if ds_srcpath.is_absolute():
# treat absolute paths as relative to the archive root
logging.warning('%s is absolute, removing leading anchor', ds_srcpath)
ds_srcpath = ds_srcpath.relative_to(ds_srcpath.anchor)
ds_srcpath = str(ds_srcpath)
with tempfile.TemporaryDirectory() as tmpdir:
logging.debug('Created temporary directory %s', tmpdir)
extractArchive(path, tmpdir,
fmt=unar.get('format', None),
patterns=unar.get('patterns', None),
exact_matches=[ds_srcpath])
return importSource2(lyr, ds_srcpath, args=args,
basedir=Path(tmpdir), extent=extent)
# Validate field value mapping
def setFieldMapValue(fld, idx, val):
if val is None:
if not fld.IsNullable():
logging.warning('Field "%s" is not NULLable but remaps NULL', fld.GetName())
return None
fldType = fld.GetType()
if fldType == ogr.OFTInteger or fldType == ogr.OFTInteger64:
if isinstance(val, int):
return val
elif fldType == ogr.OFTString:
if isinstance(val, str):
return val
elif fldType == ogr.OFTBinary:
if isinstance(val, bytes):
return val
elif fldType == ogr.OFTReal:
if isinstance(val, int):
return float(val)
elif isinstance(val, float):
return val
raise Exception(f'Field "{fld.GetName()}" mapping #{idx} has incompatible type for {ogr.GetFieldTypeName(fldType)}')
# Import a source layer (already extracted)
# This is more or less like ogr2ogr/GDALVectorTranslate() but we roll
# out our own (slower) version because GDALVectorTranslate() insists in
# calling StartTransaction() https://github.com/OSGeo/gdal/issues/3403
# while we want a single transaction for the entire desination layer,
# including truncation, source imports, and metadata changes.
def importSource2(lyr_dst, path, args={}, basedir=None, extent=None):
kwargs, _ = gdalSetOpenExArgs(args, flags=GDAL_OF_READONLY|GDAL_OF_VERBOSE_ERROR)
path2 = path if basedir is None else str(basedir.joinpath(path))
logging.debug('OpenEx(%s, %s)', path2, str(kwargs))
ds = gdal.OpenEx(path2, **kwargs)
if ds is None:
raise Exception(f'Could not open {path2}')
layername = args.get('layername', None)
if layername is None:
idx = 0
lyr = ds.GetLayerByIndex(idx)
msg = '#' + str(idx)
if lyr is not None:
layername = lyr.GetName()
msg += ' ("' + layername + '")'
else:
lyr = ds.GetLayerByName(layername)
msg = '"' + layername + '"'
if lyr is None:
raise Exception(f'Could not get requested layer {msg} from {path2}')
logging.info('Importing layer %s from "%s"', msg, path)
canIgnoreFields = lyr.TestCapability(ogr.OLCIgnoreFields)
srs = lyr.GetSpatialRef()
if srs is None:
raise Exception('Source layer has no SRS')
srs_dst = lyr_dst.GetSpatialRef()
if srs_dst is None:
logging.warning('Destination has no SRS, skipping coordinate transformation')
ct = None
elif srs_dst.IsSame(srs):
logging.debug('Both source and destination have the same SRS (%s), skipping coordinate transformation',
srs_dst.GetName())
ct = None
else:
# TODO Use GetSupportedSRSList() and SetActiveSRS() with GDAL ≥3.7.0
# when possible, see apps/ogr2ogr_lib.cpp
logging.debug('Creating transforming from source SRS (%s) to destination SRS (%s)',
srs.GetName(), srs_dst.GetName())
ct = osr.CoordinateTransformation(srs, srs_dst)
if ct is None:
raise Exception(f'Could not create transformation from source SRS ({srs.GetName()}) '
+ f'to destination SRS ({srs_dst.GetName()})')
defn = lyr.GetLayerDefn()
geomFieldCount = defn.GetGeomFieldCount()
if geomFieldCount != 1: # TODO Add support for multiple geometry fields
logging.warning('Source layer "%s" has %d != 1 geometry fields', layername, geomFieldCount)
fieldCount = defn.GetFieldCount()
fieldMap = [-1] * fieldCount
fields = args['field-map']
fieldSet = set()
ignoredFieldNames = []
for i in range(fieldCount):
fld = defn.GetFieldDefn(i)
fldName = fld.GetName()
fieldMap[i] = v = fields.get(fldName, -1)
fieldSet.add(fldName)
if v < 0 and canIgnoreFields:
# call SetIgnored() on unwanted source fields
logging.debug('Set Ignored=True on output field "%s"', fldName)
fld.SetIgnored(True)
ignoredFieldNames.append(fldName)
count0 = -1
if lyr.TestCapability(ogr.OLCFastFeatureCount):
count0 = lyr.GetFeatureCount(force=0)
if count0 == 0 and len(fieldSet) == 0:
# skip the below warning in some cases (e.g., GeoJSON source)
logging.info('Source layer "%s" has no fields nor features, skipping', layername)
return
logging.debug('Field map: %s', str(fieldMap))
for fld in fields:
if not fld in fieldSet:
logging.warning('Source layer "%s" has no field named "%s", ignoring', layername, fld)
count1 = -1
if args.get('spatial-filter', True) and extent is not None:
if extent.GetSpatialReference().IsSame(srs):
extent2 = extent
else:
extent2 = extent.Clone()
if extent2.TransformTo(srs) != ogr.OGRERR_NONE:
raise Exception(f'Could not transform extent {extent.ExportToWkt()} to {srs.GetName()}')
#logging.debug('Applying extent: %s', extent2.ExportToWkt())
lyr.SetSpatialFilter(extent2)
if lyr.TestCapability(ogr.OLCFastFeatureCount):
count1 = lyr.GetFeatureCount(force=0)
if count0 >= 0:
if count1 >= 0:
logging.info('Source layer "%s" has %d features (%d of which intersecting extent)',
layername, count0, count1)
else:
logging.info('Source layer "%s" has %d features', layername, count0)
logging.info('Ignored fields from source layer: %s',
'-' if len(ignoredFieldNames) == 0 else ', '.join(ignoredFieldNames))
# build a list of triplets (field index, replacement_for_null, [(from_value, to_value), …])
valueMap = []
for fldName, rules in args.get('value-map', {}).items():
i = defn.GetFieldIndex(fldName)
if i < 0:
raise Exception(f'Source layer "{layername}" has no field named "{fldName}"')
if fieldMap[i] < 0:
logging.warning('Ignored source field "%s" has value map', fldName)
continue
hasNullReplacement = False
nullReplacement = None
mapping = []
fld = defn.GetFieldDefn(i)
for idx, (rFrom, rTo) in enumerate(rules):
# use fld for both 'from' and 'to' (the types must match, casting is not allowed in the mapping)
if rFrom is None:
if hasNullReplacement:
logging.warning('Field "%s" has duplicate NULL replacement', fld.GetName())
else:
setFieldMapValue(fld, idx, None) # validate NULL
rTo = setFieldMapValue(fld, idx, rTo)
hasNullReplacement = True
nullReplacement = rTo
elif isinstance(rFrom, re.Pattern):
# validate but keep the rFrom regex
setFieldMapValue(fld, idx, str(rFrom))
rTo = setFieldMapValue(fld, idx, rTo)
mapping.append( (rFrom, rTo, 1) )
else:
rFrom = setFieldMapValue(fld, idx, rFrom)
rTo = setFieldMapValue(fld, idx, rTo)
mapping.append( (rFrom, rTo, 0) )
if nullReplacement is not None or len(mapping) > 0:
valueMap.append( (i, nullReplacement, mapping) )
bValueMap = len(valueMap) > 0
defn = None
defn_dst = lyr_dst.GetLayerDefn()
eGType_dst = defn_dst.GetGeomType()
eGType_dst_HasZ = ogr.GT_HasZ(eGType_dst)
eGType_dst_HasM = ogr.GT_HasM(eGType_dst)
dGeomIsUnknown = ogr.GT_Flatten(eGType_dst) == ogr.wkbUnknown
if bValueMap:
valueMapCounts = [0] * fieldCount
featureCount = 0
mismatch = {}
feature = lyr.GetNextFeature()
while feature is not None:
if bValueMap:
for i, nullReplacement, mapping in valueMap:
if not feature.IsFieldSet(i):
continue
elif feature.IsFieldNull(i):
if nullReplacement is not None:
# replace NULL with non-NULL value
feature.SetField(i, nullReplacement)
valueMapCounts[i] += 1
continue
v = feature.GetField(i)
for rFrom, rTo, rType in mapping:
if rType == 0:
# literal
if v != rFrom:
continue
elif rType == 1:
# regex
m = rFrom.fullmatch(v)
if m is None:
continue
elif rTo is not None:
rTo = rTo.format(*m.groups())
else:
raise Exception(str(rType))
if rTo is None:
# replace non-NULL value with NULL
feature.SetFieldNull(i)
else:
# replace non-NULL value with non-NULL value
feature.SetField(i, rTo)
valueMapCounts[i] += 1
break
feature2 = ogr.Feature(defn_dst)
feature2.SetFromWithMap(feature, False, fieldMap)
geom = feature2.GetGeometryRef()
if geom is None:
if eGType_dst != ogr.wkbNone:
logging.warning('Source feature #%d has no geometry, trying to transfer anyway', feature.GetFID())
else:
if ct is not None and geom.Transform(ct) != ogr.OGRERR_NONE:
raise Exception('Could not apply coordinate transformation')
eGType = geom.GetGeometryType()
if eGType != eGType_dst and not dGeomIsUnknown:
# Promote to multi, cf. apps/ogr2ogr_lib.cpp:ConvertType()
eGType2 = eGType
if eGType == ogr.wkbTriangle or eGType == ogr.wkbTIN or eGType == ogr.wkbPolyhedralSurface:
eGType2 = ogr.wkbMultiPolygon
elif not ogr.GT_IsSubClassOf(eGType, ogr.wkbGeometryCollection):
eGType2 = ogr.GT_GetCollection(eGType)
eGType2 = ogr.GT_SetModifier(eGType2, eGType_dst_HasZ, eGType_dst_HasM)
if eGType2 == eGType_dst:
mismatch[eGType] = mismatch.get(eGType, 0) + 1
geom = ogr.ForceTo(geom, eGType_dst)
# TODO call MakeValid()?
else:
raise Exception(f'Conversion from {ogr.GeometryTypeToName(eGType)} '
f'to {ogr.GeometryTypeToName(eGType_dst)} not implemented')
feature2.SetGeometryDirectly(geom)
if lyr_dst.CreateFeature(feature2) != ogr.OGRERR_NONE:
raise Exception(f'Could not transfer source feature #{feature.GetFID()}')
featureCount += 1
feature = lyr.GetNextFeature()
if bValueMap:
valueMapCounts = [ (lyr.GetLayerDefn().GetFieldDefn(i).GetName(), k) for i,k in enumerate(valueMapCounts) if k > 0 ]
lyr = None
logging.info('Imported %d features from source layer "%s"', featureCount, layername)
if bValueMap:
if len(valueMapCounts) > 0:
valueMapCounts = ', '.join([ str(k) + '× "' + n + '"' for n,k in valueMapCounts ])
else:
valueMapCounts = '-'
logging.info('Field substitutions: %s', valueMapCounts)
if len(mismatch) > 0:
mismatches = [ str(n) + '× ' + ogr.GeometryTypeToName(t)
for t,n in sorted(mismatch.items(), key=lambda x: x[1]) ]
logging.info('Forced conversion to %s: %s',
ogr.GeometryTypeToName(eGType_dst), ', '.join(mismatches))
if __name__ == '__main__':
common.init_logger(app=os.path.basename(__file__), level=logging.INFO)
parser = argparse.ArgumentParser(description='Extract and import GIS layers.')
parser.add_argument('--cachedir', default=None,
help=f'cache directory (default: {os.curdir})')
parser.add_argument('--debug', action='count', default=0,
help=argparse.SUPPRESS)
parser.add_argument('--lockfile', default=None,
help=f'obtain an exclusive lock before starting unpacking and importing')
parser.add_argument('groupname', nargs='*', help='group layer name(s) to process')
args = parser.parse_args()
if args.debug > 0:
logging.getLogger().setLevel(logging.DEBUG)
if args.debug > 1:
gdal.ConfigurePythonLogging(enable_debug=True)
common.load_config(groupnames=None if args.groupname == [] else args.groupname)
# validate configuration
if 'dataset' not in common.config:
raise Exception('Configuration does not specify output dataset')
layers = common.config.get('layers', {})
for layername, layerdefs in layers.items():
for idx, layerdef in enumerate(layerdefs['sources']):
importdef = layerdef.get('import', None)
if importdef is None:
raise Exception(f'Output layer "{layername}" source #{idx} has no import definition')
sourcedef = layerdef.get('source', None)
unar = None if sourcedef is None else sourcedef.get('unar', None)
src = None if sourcedef is None else sourcedef['cache'].get('path', None)
ds_srcpath = importdef.get('path', None)
if src is None and unar is None and ds_srcpath is not None:
# fallback to importe:path if there is no unarchiving receipe
src = Path(ds_srcpath)
if unar is not None and ds_srcpath is None:
raise Exception(f'Output layer "{layername}" source #{idx} has no import source path')
if src is None:
raise Exception(f'Output layer "{layername}" source #{idx} has no source path')
layerdef['source'] = { 'path': src, 'unar': unar }
# set global GDAL/OGR configuration options
for pszKey, pszValue in common.config.get('GDALconfig', {}).items():
logging.debug('gdal.SetConfigOption(%s, %s)', pszKey, pszValue)
gdal.SetConfigOption(pszKey, pszValue)
# open output dataset (possibly create it first)
dso = openOutputDS(common.config['dataset'])
validateSchema(layers,
drvo=dso.GetDriver(),
lco_defaults=common.config['dataset'].get('create-layer-options', None))
# get configured Spatial Reference System and extent
srs = common.getSRS(common.config.get('SRS', None))
extent = common.getExtent(common.config.get('extent', None), srs=srs)[0]
if args.lockfile is not None:
# obtain an exclusive lock and don't release it until exiting the program
lock_fd = os.open(args.lockfile, O_WRONLY|O_CREAT|O_TRUNC|O_CLOEXEC, mode=0o644)
logging.debug('flock("%s", LOCK_EX)', args.lockfile)
flock(lock_fd, LOCK_EX)
cachedir = Path(args.cachedir) if args.cachedir is not None else None
rv = 0
for layername, layerdef in layers.items():
sources = layerdef['sources']
if sources is None or len(sources) < 1:
logging.warning('Output layer "%s" has no definition, skipping', layername)
continue
logging.info('Processing output layer "%s"', layername)
transaction = False
try:
# get output layer
outLayerIsNotEmpty = True
lco = layerdef.get('create', None)
lyr = dso.GetLayerByName(layername)
if lyr is not None:
# TODO dso.DeleteLayer(layername) if --overwrite and dso.TestCapability(ogr.ODsCDeleteLayer)
# (Sets OVERWRITE=YES for PostgreSQL and GPKG.)
validateOutputLayer(lyr, srs=srs, options=lco)
# TODO bail out if all source files are older than lyr's last_change
elif not dso.TestCapability(ogr.ODsCCreateLayer):
raise Exception(f'Output driver {dso.GetDriver().ShortName} does not support layer creation')
elif lco is None or len(lco) < 1:
raise Exception(f'Missing schema for new output layer "{layername}"')
else:
lyr = createOutputLayer(dso, layername, srs=srs, options=lco)
outLayerIsNotEmpty = False
if not lyr.TestCapability(ogr.OLCSequentialWrite):
raise Exception(f'Output layer "{layername}" has no working CreateFeature() method')
# setup output field mapping in the sources dictionary
setOutputFieldMap(lyr.GetLayerDefn(), sources)
# start transaction if possible
if lyr.TestCapability(ogr.OLCTransactions):
logging.debug('Starting transaction')
transaction = lyr.StartTransaction() == ogr.OGRERR_NONE
else:
logging.warning('Unsafe update, output layer "%s" does not support transactions', layername)
if outLayerIsNotEmpty:
# clear non-empty output layer
clearLayer(dso, lyr)
description = layerdef.get('description', None)
if description is not None and lyr.SetMetadataItem('DESCRIPTION', description) != GDAL_CE_None:
logging.warning('Could not set description metadata')
for source in sources:
# import source layers
importSource(lyr, **source['source'], args=source['import'],
cachedir=cachedir, extent=extent)
if transaction:
# commit transaction
logging.debug('Committing transaction')
transaction = False
if lyr.CommitTransaction() != ogr.OGRERR_NONE:
logging.error('Could not commit transaction')
rv = 1
except Exception:
if transaction:
logging.error('Exception occured in transaction, rolling back')
try:
if lyr.RollbackTransaction() != ogr.OGRERR_NONE:
logging.error('Could not rollback transaction')
except RuntimeError:
logging.exception('Could not rollback transaction')
logging.exception('Could not import layer "%s"', layername)
rv = 1
finally:
# close output layer
lyr = None
dso = None
srs = None
extent = None
exit(rv)
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